Publication highlights

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Explore a selection of research case studies from the past five years.

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Different types of cells in red and blue

How a transcription factor drives the clustering of CD8+ T cells and facilitates the delivery of messages

An effective response to infection is critically dependent on the maturation and proliferation of infection-fighting killer CD8+ T cells. This requires the cytokine IL-2, but how IL-2 is delivered to maturing CD8+ cells has been poorly understood. The Signalling and Transcription Laboratory Laboratory at the Crick has now shown that the transcription factor SRF plays a crucial role in the process. SRF was first discovered as a regulator of genes associated with cell proliferation, but somewhat unexpectedly, its role in CD8+ T cell proliferation is to help in the assembly of cell clusters. This activity requires SRF's MRTF cofactors, which control multiple cytoskeletal structural and regulatory genes. Cell clustering allows IL-2 to be efficiently trafficked between cells, and without it sustained proliferation of CD8+ T cells cannot occur. This work demonstrates a novel way by which SRF can promote cell proliferation.

IL-2 delivery to CD8+ T cells during infection requires MRTF/SRF-dependent gene expression and cytoskeletal dynamics

Published in Nature Communications

Published

Mutual dependence of the MRTF-SRF and YAP-TEAD pathways in cancer-associated fibroblasts is indirect and mediated by cytoskeletal dynamics

The MRTF-SRF and the YAP-TEAD transcriptional regulatory networks both respond to extracellular signals and mechanical stimuli: the MRTFs are controlled directly by G-actin, while YAP activity is somehow potentiated by F-actin. Cancer-associated fibroblasts play an important pro-invasive role in stimulating cancer progression, and previous studies have shown that this involves YAP-TEAD signalling. This paper shows that CAFs also exhibit mechanically-dependent MRTF activation, which is also required for their contractile and pro-invasive activity. The two pathways are mutually dependent, requiring recruitment of MRTF and YAP to DNA via their respective DNA-binding partners, and reflecting their ability to control cytoskeletal gene expression.

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Published in Genes & Development

Published

Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme

Unlike kinases, PPP-family phosphatases such as PP1 have little intrinsic specificity. PP1 acts in partnership with over 200 different PP1-interacting proteins, but it has remained unclear how they might confer sequence-specificity on PP1. We used proteomics to identify dozens of candidate Phactr1/PP1 substrates, and used structural and biochemical approaches to show that the Phactr1/PP1 holoenzyme is sequence-specific. Phactr1 binding reshapes the PP1 hydrophobic groove, thereby creating a novel composite hydrophobic surface for substrate recognition. This study explains how cofactors can enhance the reactivity of PP1 toward specific substrates, and suggests a way forward for the development of PP1 holoenzyme-specific inhibitors.

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Published in eLife

Published

RPEL-family rhoGAPs link Rac/Cdc42 GTP loading to G-actin availability

This paper shows that the ArhGAP9/12/15/27 and ArhGAP32/33 families of rhoGAPs are RPEL proteins whose activity is coupled to G-actin concentration. G-actin forms a 1:1 complex with these ArhGAPs, interacting with an RPEL motif located between the PH and GAP domains, thereby inhibiting their GAP activity. Mutations that block G-actin binding exhibit elevated GAP activity towards their substrate GTPases Rac and Cdc42. Strikingly, treatment of cells with drugs enhancing or inhibiting G-actin/ArhGAP interaction has corresponding effects on Rac GTP loading. These results establish a novel homeostatic feedback loop, in which ArhGAP12-family (and presumably ArhGAP32-family) GAP activity increases when G-actin levels become limiting.

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Published in Nature Cell Biology

Published