Publication highlights

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Covid viruses floating

Third exposure to COVID-19 infection or vaccination initiates a different immune response

COVID-19 restrictions including social distancing were lifted in the UK in 2021 after the majority of the population had two doses of vaccine. Researchers at the Crick analysed data from the Legacy study to find out if either infection or vaccine as a third exposure generated different immunity. We found overall that both antibody-mediated and cellular immunity was similar, but when T cells were exposed to spike protein challenge in vitro, infection exposure drove production of more innate immune cytokines from T cells and expansion of mucosal-homing T cells, whereas vaccine-only exposed cells led to expansion of the T cell memory population that produced more inflammatory cytokines.

Third exposure to COVID-19 infection or vaccination differentially impacts T cell responses

Published in Journal of Infection

Published

A vial of COVID-19 vaccine in a blue gloved hand.

Vaccine monitoring crucial as SARS-CoV-2 variants continue to evolve

Researchers at the Francis Crick Institute and the National Institute for Health and Care Research Biomedical Research Centre at UCLH have highlighted the importance of continued surveillance of emerging SARS-CoV-2 variants and vaccine performance as the virus continues to evolve. The research, part of the Legacy study, compared the newer monovalent COVID vaccine with older bivalent vaccines used in the Autumn 2023 booster campaign, finding that both vaccines generated neutralising antibodies against the most recent strain of Omicron, BA.2.86. However the new monovalent vaccine generated higher levels of antibodies against a range of other Omicron variants. This highlights the importance of careful vaccine updates and continuing to complement a vaccination programme with the development of antibody drugs that work against all variants, as some more vulnerable people don’t respond well to vaccines.

Divergent performance of vaccines in the UK autumn 2023 COVID-19 booster campaign

Published in The Lancet

Published

PCR testing at the Crick.

Will mucosal vaccines work against SARS-CoV-2?

Does infection or vaccination induce nasal neutralising antibodies to SARS-CoV-2 variants? The Covid Surveillance Unit has developed a fast, easy method to test if antibodies in nasal mucosa stop SARS-CoV-2 replicating in cells in swabs from participants in the UCLH-Crick Legacy study. Both vaccination and infection boosted antibody levels in nasal mucus, and repeated vaccinations could enhance this. Importantly, the range of nasal antibodies differs from that in blood, which means current vaccines may not stop infections with new antigenically different variants. The methodology used in the study will make it easy to evaluate next generation vaccines, including mucosal vaccines.

SARS-CoV-2 mucosal neutralising immunity after vaccination

Published in The Lancet Infectious Diseases

Published

Autophagy (self-eating) protein in green is targeted to unusual destinations by a flu protein in red.

Correlates of protection against SARS-CoV-2 Delta infection after vaccination within SIREN

The UKHSA SIREN study in collaboration with the Francis Crick Institute has identified that neutralising antibodies strongly correlate with protection against SARS-CoV-2 infection after vaccination.
SIREN participants are healthcare workers who provided monthly or quarterly blood samples throughout the study, as well as PCR testing every two weeks. The researchers compared antibody responses in 130 participants with Delta infection after a second vaccine dose (cases) to participants that were never infected before or after vaccination (controls). Antibody tests included measuring the total amount of antibodies developed from vaccination (anti-S) and specific neutralising antibodies against different live SARS-CoV-2 viruses that block infection.

Their findings demonstrated that, at seven days before infection, total anti-S antibodies were somewhat associated with protection: people were 29% less likely to develop an infection as antibody levels doubled. However, no specific threshold for protection was observed. In contrast, people with neutralising antibodies against the Delta variant above a threshold of 1 in 40 were 89% less likely to develop an infection.
This suggests that measuring specific neutralising antibodies can determine how susceptible a population is to infection. These findings are key for planning future vaccination strategies, and other public health measures around COVID-19.

Antibody correlates of protection against Delta infection after vaccination: A nested case-control within the UK-based SIREN study

Published in Journal of Infection

Published

A plot on a computer screen.

Asymptomatic testing key to pandemic preparedness

Asymptomatic PCR testing for NHS staff, provided by the Francis Crick Institute and University College London Hospitals (UCLH) NHS Foundation Trust and its diagnostic partner Health Services Laboratories, effectively detected COVID-19 infections that would have otherwise been missed. The researchers examined test positivity rates across different NHS trusts, observing that from the 680,000 tests run through the testing pipeline, 40.8% of all positive tests were from UCLH and The Royal Marsden NHS Foundation Trust. This high incidence suggests a significant number of additional infections were being detected by this strategy.

Independent SARS-CoV-2 staff testing protected academic and health-care institutions in northwest London

Published in The Lancet

Published

A plot on a computer screen.

Why the UK didn't experience the predicted severe COVID wave from Omicron "escape variants"

In the UCLH-Crick Legacy study, the team asked why the UK didn't experience the predicted severe COVID wave from Omicron “escape variants” XBB and B.Q.1.1 (variants which arise from weaker immune responses to the vaccine) in winter 2022, unlike Singapore and the US. They used serum collected from Legacy study volunteers and tested for neutralising antibodies against these “escape variants” before and after the bilvalent vaccine - a type of vaccine which targets the original strain and Omicron strain.

Using data from the COVID Surveillance Unit’s specialist antibody tests against variants XBB, XBB.1.5 and BQ.1.1, they found that neutralising antibodies against these variants were boosted 3-4-fold in all participants after the bivalent vaccine. They also found any prior infection was a major contributor to high levels of neutralising antibodies against these new variants, but participants who hadn’t been infected still had neutralising antibodies against XBB after vaccination. Any 4th “encounter” with another Omicron variant, Spike, in 2022, boosted antibodies against these variants in patients who had had three vaccines. People who had been infected with the BA.1/2/5 variant had similar levels of antibodies as those who had been given the 4th vaccine. In summary, the UK’s targeted 4th dose vaccine policy by JCVI complemented widespread existing hybrid immunity in the wider UK population, protecting against the predicted severe wave of COVID-19 in UK winter 2022-3.

Neutralising immunity to omicron sublineages BQ.1.1, XBB, and XBB.1.5 in healthy adults is boosted by bivalent BA.1-containing mRNA vaccination and previous Omicron infection

Published in The Lancet Infectious Diseases

Published

COVID-19 vaccine booster provides good antibody protection against Omicron

As part of the CAPTURE study, researchers in collaboration with the National Institute for Health Research (NIHR) UCLH Biomedical Research Centre found that antibodies generated in people who had received only two doses of either the Oxford/AstraZeneca vaccine or the Pfizer/BioNTech vaccine were less able to neutralise the Omicron variant as compared to the Alpha and Delta variants. They also found that antibody levels dropped off in the first three months following the second dose but that a third ‘booster’ dose raised levels of antibodies that effectively neutralise the Omicron variant.

Three-dose vaccination elicits neutralising antibodies against omicron

Published in The Lancet

Published