Publication highlights

Go inside our research

Explore a selection of research case studies from the past five years.

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Red and yellow fibrous strings along with small blue dots scattered across a black background

Genetic clues explain why children develop rare post-COVID condition

Scientists from Imperial College London and the Francis Crick Institute have uncovered genetic variants which help to explain why some children with mild COVID-19 go on to develop a severe inflammatory condition weeks after their infection. Throughout the COVID-19 pandemic, severe SARS-CoV-2 infections in children and infants were rare. But an estimated 1 in 10,000 children went on to develop multisystem inflammatory syndrome in children (MIS-C), presenting with a range of symptoms including rash, swelling and nausea and vomiting. In an analysis including more than 150 cases of MIS-C from Europe and the United States, the researchers in this study found that rare variations of a gene which helps regulate the lining of the gut made children four-times more likely to develop systemic inflammation and an array of symptoms. Understanding the genetic basis of MIS-C provides new insights into how the condition develops, who is at risk, and how patients and those with related conditions might be better treated.

Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C)

Published in Journal of Experimental Medicine

Published

Gamma delta T cells (grey/purple spheres) keep watch while other T cells have gone to sleep. 

Immune cell helps predict skin cancer patients’ chances of responding to treatment

A type of immune cell can help predict which patients may benefit most from cancer immunotherapies, researchers from the Francis Crick Institute, King’s College London and Guy’s and St Thomas’ Hospital Trust, have found. The study, published today in Nature Cancer, found that a rare type of T cells (a type of immune cell), can help predict the likelihood of whether a patient with advanced skin cancer will be responsive to immunotherapy treatments. The results could also lead to the development of new and more effective treatments for patients with melanoma who do not benefit from current immunotherapies.

PD-1 defines a distinct, functional, tissue-adapted state in Vδ1+ T cells with implications for cancer immunotherapy

Published in Nature Cancer

Published

Gut Gamma Delta T cells detected by their expression of TCR delta chain RNA (red) line the human colonic epithelium (DAPI; blue) where they are well-placed to perform frontline immune surveillance.

Specialised gut immune cells pinpointed that can limit progression of inflammatory bowel disease

Researchers at the Francis Crick Institute, King’s College London and Guy’s and St Thomas’ NHS Foundation Trust have characterised a specialised type of immune cell, which plays a key role in protecting and repairing the cells in the healthy human gut. The researchers investigated tissue from over 150 patients at Guy’s and St Thomas’ NHS Foundation Trust, dissecting a major population of T cells called gamma delta (γδ) T cells in the colons of people with healthy guts and people with IBD. In healthy guts, there was a unique specialised subset of gamma delta cells, termed V-gamma-4 (V4) cells, that intriguingly were significantly altered and often conspicuously depleted in inflamed IBD samples.

The researchers also observed that, in people whose inflammation had improved, those with restored V4 T cell function were less likely to relapse than those who did not. This suggests that assessing the status of V4 T cells could be a useful biomarker for disease progression.

Conserved γδ T cell selection by BTNL proteins limits progression of human inflammatory bowel disease

Published in Science

Published

Thymus

Researchers identify stem cells in the thymus for the first time

Researchers at the Francis Crick Institute and UCL have identified stem cells in the human thymus for the first time. These cells represent a potential new target to understand immune diseases and cancer and how to boost the immune system. The researchers found that these stem cells, named Polykeratin cells, express a variety of genes allowing them to give rise to many cell types not previously considered to have a common origin. They can develop into epithelial as well as muscle and neuroendocrine cells, highlighting the importance of the thymus in hormonal regulation. The researchers isolated Polykeratin stem cells in a dish and were able to show that thymus stem cells can be extensively expanded. They demonstrated that all the complex cells in the thymus epithelium could be produced from a single stem cell, highlighting a remarkable and yet untapped regenerative potential.

Defining the identity and the niches of epithelial stem cells with highly pleiotropic multilineage potency in the human thymus

Published in Developmental Cell

Published

Gamma delta T cells monitor tissue health

Although distress signals from microbes and tissue damage have long been appreciated as instigators of immunity, how surface tissue (epithelial) health is monitored remains poorly understood. Work from the Hayday lab has identified how gamma delta T cells, a population of specialised immune cells, sense the body’s status quo, enabling them to assess the health of surface tissues and protect against UVR-induced DNA damage and inflammation, two cancer-disposing factors.

Normality sensing licenses local T cells for innate-like tissue surveillance

Published in Nature Immunology

Published

Reconstitution of a functional human thymus by postnatal stromal progenitor cells and natural whole-organ scaffolds

In this paper we define the heterogeneity and the clonogenic potential of human thymus stroma; characterise progenitor cells capable of extensive expansion in vitro, thereby achieving clinically relevant numbers with resilience to long-term storage; and report an epithelial-mesenchymal hybrid phenotype of thymus epithelial cells in vivo and in vitro that affects cell behaviour, a unique feature among any epithelia so far reported. We describe a protocol for organs that lack a main vascular access that allowed us to specify the role of natural ECM in supporting organ morphogenesis ex vivo and in vivo; and reconstitute a functional human thymus long-term in vivo.

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Published in Nature Communications

Published

Epithelia use butyrophilin-like molecules to shape organ-specific γδ T cell compartments

This paper established that intestinal epithelial cells use BTNL/Btnl molecules to select for and regulate tissue-specific gamma delta T cell compartments. It established a biological mechanism by which epithelial cells communicate with local T cells at steady-state (“normality sensing”). Following on from our prototypic discovery of such a mechanism in mouse skin, the work established conservation of the process across tissues as well as across species. The system is unperturbed by microbial colonisation.

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Published in Cell

Published

High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation

The immune system is increasingly acknowledged to be integrated with general physiology, but the genetic pathways underpinning those are largely unknown. This study demonstrated that high-content immunophenotyping could be accomplished at scale, compatible with a genetic screen and in so doing identified 80 novel immunoregulators (“hits”) and established striking correlations of immunological traits with blood biochemistry markers such as cholesterol and sodium. The paper formed a basis for the successful and rapid application of high-content high-throughput profiling to COVID-IP and to cancer immunomonitoring, and has spawned mechanistic follow-up studies of several of the hits.

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Published in Nature Immunology

Published

A COVID-19 virus particle

A dynamic COVID-19 immune signature includes associations with poor prognosis

SARS-CoV-2 infection and life-threatening COVID-19 caused the world’s most severe infectious disease pandemic in 100 years. An immediate priority was to decipher what was happening to patients’ immune systems. Rapidly deploying its skill-sets in high-content, high-throughput immunoprofiling, the Immunosurveillance Laboratory identified a dynamic, COVID-19 immune signature that blended textbook immunoprotection with examples of immune dysregulation that today’s textbooks do not describe. Among those, three molecules measured upon hospital admission seemingly predict a patient’s likelihood of deterioration over the next week; knowledge which can benefit health-care resource management, and offer novel therapeutic targets in COVID-19 and other inflammatory infectious diseases.

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Published in Nature Medicine

Published