Publication highlights

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Explore a selection of research case studies from the past five years.

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Covid viruses floating

Third exposure to COVID-19 infection or vaccination initiates a different immune response

COVID-19 restrictions including social distancing were lifted in the UK in 2021 after the majority of the population had two doses of vaccine. Researchers at the Crick analysed data from the Legacy study to find out if either infection or vaccine as a third exposure generated different immunity. We found overall that both antibody-mediated and cellular immunity was similar, but when T cells were exposed to spike protein challenge in vitro, infection exposure drove production of more innate immune cytokines from T cells and expansion of mucosal-homing T cells, whereas vaccine-only exposed cells led to expansion of the T cell memory population that produced more inflammatory cytokines.

Third exposure to COVID-19 infection or vaccination differentially impacts T cell responses

Published in Journal of Infection

Published

Blood brain barrier model

Scientists explore how TB bacteria enter the brain

Researchers at the Francis Crick Institute have shown how the bacteria causing tuberculosis (TB) directly cross the brain’s protective barrier, causing meningitis, and how HIV co-infection impacts TB bacteria entering and infecting brain cells. The researchers first introduced TB bacteria to different types of brain cells separately, including astrocytes, pericytes, microglia and endothelial cells, finding that the bacteria effectively entered and grew in each cell type. When cells were incubated with HIV before TB exposure, the researchers observed increased entry of TB bacteria into astrocytes, pericytes and microglia, but not endothelial cells. By measuring how well molecules crossed a 3D replica blood-brain barrier, they showed that TB bacteria increase the permeability of the barrier. Finally they showed that TB bacteria weaken the integrity of cells at the barrier, increase glutamate outside cells and stimulate production of inflammatory molecules.

Effects of M. tuberculosis and HIV-1 infection on in vitro blood-brain barrier function

Published in Journal of Neuroinflammation

Published

Khayelitsha, South Africa: a peri-urban township of around 400000 people 30 km from the centre of Cape Town.

Advancing the chemotherapy of tuberculous meningitis

Tuberculosis is most commonly thought of an encountered as a lung disease. However it may also enter the brain to cause meningitis (TBM) which causes death or disability in approximately 50% of those affected and kills approximately 78200 adults every year. Antibiotic treatment is based on that used for lung disease which overlooks important differences in the ability of drugs to reach the brain. TBM has a profound inflammatory component which also requires treatment, yet only steroid have shown benefit. There is now an active pipeline of new anti-TB drugs, and the increasing availability of better and more specific anti-inflammatory therapies could bring a a new era of improved TBM treatment and outcomes. Yet, to date, TBM studies have been relatively few, progress is slow, and a new approach is required. In this article the views of a global consortium of TBM researchers are articulated towards a coordinated, definitive way ahead via globally conducted clinical trials of novel drugs and regimens to advance treatment and improve outcomes from this life-threatening infection.

Advancing the chemotherapy of tuberculous meningitis: a consensus view

Published in The Lancet Infectious Diseases

Published

Khayelitsha, South Africa: a peri-urban township of around 400000 people 30 km from the centre of Cape Town.

Association of respiratory tract infections and the microbiome

The microbiome has been recognised as an essential element in the body's protection against infectious agents. Microorganisms enter the body through different routes, including the oral one, making it an important niche for potential pathogens. An imbalance in the composition of the oropharyngeal microbiome can lead to increase risks of respiratory tract infections, which still represent a major public health problem worldwide, particularly in developing countries. Characterising the microbiome of this ecological niche in developing countries is essential for identifying biomarkers of infections. This manuscript presents the results of the first study on the link between the oropharyngeal microbiome and symptomatic upper respiratory tract infections in children in Côte d'Ivoire. It provides a description of the microbiota as well as an understanding of potential microbial markers of infection for pathogens such as Streptococcus pneumonia, Haemophilus influenza and Sars-Cov2. The results of this study add to the knowledge on the microbiome in diverse and understudied settings.

Association of symptomatic upper respiratory tract infections with the alteration of the oropharyngeal microbiome in a cohort of school children in Côte d'Ivoire

Published in Frontiers in Microbiology

Published

Khayelitsha, South Africa: a peri-urban township of around 400000 people 30 km from the centre of Cape Town.

Influence of vitamin D supplementation on growth in children

Researchers from the University of Cape Town and the Crick worked together to investigate vitamin D supplementation and growth in children. Results from a clinical trial, conducted in a large number of African schoolchildren in Cape Town, South Africa, showed that a 3-year course of weekly vitamin D supplementation was effective in elevating vitamin D levels, however this was not associated with any effect on growth, body composition, pubertal development or lung volumes. There has been a lot of interest in the links between vitamin D deficiency in childhood and slower linear growth, reduced lean mass, obesity and precocious puberty, but this study suggests that vitamin D supplementation wouldn't be a useful intervention.

Influence of vitamin D supplementation on growth, body composition, pubertal development and spirometry in South African schoolchildren: a randomised controlled trial (ViDiKids)

Published in BMJ Paediatrics Open

Published

Khayelitsha, South Africa: a peri-urban township of around 400000 people 30 km from the centre of Cape Town.

Nanopore sequencing used to develop personalised TB drug dosing

Standardised dosing of TB drugs results in variable drug levels in a person’s blood, which is associated with side effects, poor treatment outcomes and a risk of relapse. Mutations in genes affecting drug metabolism might explain this variability, however there has been a lack of tests to predict metabolism of anti-TB drugs. Researchers in the Wilkinson lab, Stanford University and the University of Cape Town have validated the use of nanopore sequencing to detect genetic markers that influence TB drug metabolism. They tested their method on 48 samples and saw 100% similarity to classic genome sequencing using Illumina technology. They then validated the method using DNA from 100 South African patients with TB undergoing treatment. These findings can help guide personalised drug dosing for TB treatment or prevention using an affordable and portable device.

A nanopore sequencing-based pharmacogenomic panel to personalize tuberculosis drug dosing

Published in American Journal of Respiratory and Critical Care Medicine

Published

Cells in the brain which can be infected by COVID-19.

Scientists begin to untangle how COVID-19 affects brain cells

Researchers at the Francis Crick Institute have shown in lab-based experiments that variants of SARS-CoV-2, the virus that causes COVID-19, can affect the blood-brain barrier and damage brain cells in different ways. This work gives clues as to how the virus could enter the brain, but doesn’t take into account the protection that people have acquired through vaccination. Brain cells and a 3D model of a blood-brain barrier were exposed to different strains of SARS-CoV-2: wild-type (the original variant from Wuhan), Alpha, Beta, Delta, Eta and Omicron. The brain cells investigated were pericytes, astrocytes, endothelial cells and microglia – cells that support nerve cells and control how permissible the blood-brain barrier is to allowing molecules and cells to cross. The researchers showed that all variants caused stress to brain cells, stopping them from working as well, but exactly which cells were affected depended on the variant.

Differential effects of SARS-CoV-2 variants on central nervous system cells and blood-brain barrier functions

Published in Journal of Neuroinflammation

Published

Patients with blood cancer found to have lower protection against SARS-CoV-2

As part of the largest study to comprehensively evaluate the response of patients with cancer to COVID-19 vaccines, researchers in the Turajlic lab monitored the immune response of 585 patients with different types of cancer after receiving a first and second dose of the COVID-19 vaccine.
They found that patients with blood cancer were less likely to have antibodies than individuals of a similar age without cancer or with solid cancer, and when they did have antibodies, the levels were lower against all variants.

Adaptive immunity and neutralizing antibodies against SARS-CoV-2 variants of concern following vaccination in patients with cancer: the CAPTURE study

Published in Nature Cancer

Published

Characterization of progressive HIV-associated tuberculosis using 2-deoxy-2-[18F]fluoro-ᴅ-glucose positron emission and computed tomography

This work used high-resolution PET/CT imaging to establish for the first time in humans the existence of a high-risk asymptomatic transition state between latent infection and active disease. The technique is thus a phenotypic benchmark for further experimental medicine studies of interventions to prevent progression of asymptomatic subclinical tuberculosis.

View the publication

Published in Nature Medicine

Published

Final analysis of a trial of M72/AS01E vaccine to prevent tuberculosis

Among adults infected with M. tuberculosis, vaccination with M72/AS01E elicited an immune response and provided protection against progression to pulmonary tuberculosis disease for at least 3 years. This is the first vaccine against tuberculosis to be shown effective in humans since the advent of BCG in 1921. A product development and further testing plan has recently been agreed and we will contribute to the latter.

View the publication

Published in New England Journal of Medicine

Published