Publication highlights

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Explore a selection of research case studies from the past five years.

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Structure of betaglycan

Revealing at high resolution how molecules work together to boost signalling

Researchers at the Crick and the University of Pittsburgh have used x-ray crystallography and cryo-electron microscopy to determine the structures of betaglycan - a co-receptor involved in cell signalling - in complex with the TGF-β protein and its signalling receptors. They found that both domains in betaglycan are involved in ligand binding, demonstrated how this occurs, and revealed that their arrangement also allows for signalling receptor recruitment. The results provide a structural explanation for how betaglycan functions to capture the ligand and hand it over to the receptors in a sequential manner, to selectively enhance TGF-β signalling.

Structures of TGF-β with betaglycan and signaling receptors reveal mechanisms of complex assembly and signaling

Published in Nature Communications

Published

An image montage showing three different kinds of signalling in zebrafish embryos and a breast cancer organoid.

Fish, flies and fibroblasts under the spotlight: tracking Erk signalling dynamics live

Tissue development and homeostasis require coordinated communication, proliferation, and movement of cells on a grand scale. Erk is a key protein connecting these processes downstream of many signals. Depending on the signal, different Erk dynamics can be achieved that drive different cell behaviours. Researchers at the Crick wanted to investigate the role of Fgf/Erk signalling during early development using a live biosensor, called the Erk Kinase Translocation Reporter (Erk-KTR), but found that the readout was masked by off-target activity of another protein called Cdk1, a particular problem during rapid embryonic cell cycles. They therefore generated an improved Erk-specific KTR (modErk-KTR) and demonstrated its Erk-specificity in vitro and in multiple zebrafish and Drosophila tissues.

Using this tool, the researchers tracked the growth of the Fgf/Erk signalling gradient in zebrafish early embryos. In a type of cell called a mesendodermal cell, they saw that Erk activity is rapidly stopped before mitosis (cell replication). The two daughter cells reactivate Erk signalling once mitosis is complete. They conclude that mitosis creates variable pulses of Erk inactivity – called ‘mitotic erasure’ – during a key window of embryo development.

An improved Erk biosensor detects oscillatory Erk dynamics driven by mitotic erasure during early development

Published in Developmental Cell

Published

Random cell fate switching revealed in early embryonic development

How complex organisms are constructed from far simpler embryos is a central problem of biology. During embryonic development, pluripotent cells are guided to a variety of cell fates by a series of decision-making processes involving gradients of chemical and mechanical signals. A concentration gradient of the Nodal protein has long been thought to specify endodermal and mesodermal cell fates, depending on how much Nodal a cell is exposed to. However, this model is too simple, as neighbouring cells in the embryo can adopt different fates despite being exposed to similar concentrations of Nodal. The Hill lab has demonstrated that rather than pushing cells down a particular path, a gradient of Nodal signalling establishes a window of competency in which cells can switch to an endodermal fate. Those that don’t switch become mesoderm. Switching is a random event, the likelihood of which is modulated by signalling from another protein, Fgf. This imprecise mechanism is honed at later stages to produce clearly defined endoderm.

Nodal signaling establishes a competency window for stochastic cell fate switching

Published in Developmental Cell

Published

Researchers identify role of key gene in embryonic development

A zebrafish study by researchers in the Hill lab has provided new insights into the role of the SMAD4 protein in vertebrate embryo development. Very early in development, SMAD4 was thought to be required to transmit signals from two closely related members of the TGF-β protein family, BMP and Nodal, which are responsible for organising different parts of the body plan of an embryo. Surprisingly, when the Smad4 gene was deleted in zebrafish, the parts of the embryo patterned by BMP signalling were severely disrupted, but those for which Nodal was responsible were far less affected. SMAD4 is thus differentially required for signalling by different TGF-β family members, which has implications for diseases such as cancer where it is mutated or deleted.

Smad4 controls signaling robustness and morphogenesis by differentially contributing to the Nodal and BMP pathways

Published in Nature Communications

Published

A therapeutic target for two diseases

Research from the Hill lab has identified the underlying molecular mechanism for two diseases that share a common causal mutation and currently have no effective treatments. The team used optogenetics and live-imaging approaches to show the link between genetic mutation and disrupted signalling that causes these diseases.

Pathogenic ACVR1R206H activation by Activin A-induced receptor clustering and autophosphorylation

Published in The EMBO Journal

Published

A temporal window for signal activation dictates the dimensions of a nodal signaling domain

This paper shows how temporal information in the zebrafish embryo is transformed into a spatial pattern. We demonstrate how the Nodal signalling gradient is formed in the early zebrafish embryo and show that its size and shape are determined by a temporal signal activation window created by a microRNA-mediated delay in the translation of Lefty, a Nodal antagonist. This paper was important as it not only challenged the long-held view in the field that the Nodal gradient was formed by a reaction–diffusion mechanism, but highlighted the importance of signalling duration in gradient formation.

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Published in Developmental Cell

Published

Long-range signaling activation and local inhibition separate the mesoderm and endoderm lineages

The induction of endoderm and mesoderm by the signalling molecule Nodal has long been a textbook example of how a morphogen patterns vertebrate tissues. This study overturned the view that tissues are patterned through a single long-range morphogen gradient. Instead we demonstrated that Nodal functions in an incoherent feedforward loop with Fgf, to determine endoderm and mesoderm specification. Nodal induces long-range Fgf signaling, which is required for mesoderm induction, while simultaneously inducing a cell-autonomous Fgf signaling inhibitor within cells destined to become endoderm. This work represents a major step forward in deciphering the organising principles underlying early embryonic patterning.

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Published in Developmental Cell

Published

Mutations in SKI in Shprintzen-Goldberg syndrome lead to attenuated TGF-β responses through SKI stabilization

Using a combination of structural biology, genome editing, and biochemistry, a new study from the Hill lab showed that Shprintzen–Goldberg syndrome is associated with an attenuation of TGF-β-induced transcriptional responses, and not enhancement, as previously predicted.

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Published in eLife

Published