Publication highlights

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Explore a selection of research case studies from the past five years.

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Fruit fly intestine in virgin and pregnant mice

Pregnancy irreversibly remodels the mouse intestine

Researchers have found that the small intestine grows in response to pregnancy in mice. This partially irreversible change may help mice support a pregnancy and prepare for a second. They found that pregnant mice had a longer small intestine from just seven days into the pregnancy. By the end of the pregnancy, around day 18, the small intestine was 18% longer, and it remained longer up to 35 days after lactation. The villi and crypts inside the small intestine also became longer and deeper at the same time, but returned to pre-pregnancy values just seven days after weaning. The researchers identified an increase in a membrane protein called SGLT3a early in pregnancy. This sodium and proton sensor was responsible for about 45% of the villi growth triggered by reproduction but wasn't necessary for entire small intestine lengthening. The team believe hormones may play a role in switching on the gene for SGLT3a.

Growth of the maternal intestine during reproduction

Published in Cell

Published

Images of cells choosing which type to become

New insights into cell fate decisions outlined

Once upon a time, you were one cell, and of course when you were one cell, you were only one kind of cell. You are now made up of perhaps 400 kinds of cells. How did each cell decide what to be?

These questions have been studied for a long time. Waddington’s famous work of the 1950s suggested cells roll downhill to a Y-junction, where they choose between two potential fates. A research team at the Crick's contribution is to observe that often there is no Y-junction. They observe cases where one cell type, the majority, continues its development along a straight path while the other potential fate branches off from this. This new insight has been enabled by single-cell RNA-seq technology, which enables them to study gene expression at high resolution, a new mathematical insight, and software (TrajectoryGeometry) that they have created to exploit this insight.

TrajectoryGeometry suggests cell fate decisions can involve branches rather than bifurcations

Published in NAR Genomics and Bioinformatics

Published

A group of neurons, glial cells  and immune cells  within the gut wall.

Glia in the gut shown to maintain the potential to become neurons

Innervation of the gut is necessary for the regulation of digestive functions and for protection from micro-organisms which cause disease. To perform these important tasks, the gut is colonised during embryonic development by a small population of unspecified cells that expands rapidly and generates a vast number of specialised nerve cells, that control the movement of food through the gut. This population also generates support cells called glial cells. These protect the nerves and at the same time help the rest of gut tissue to fight infections and repair potential damage caused by them.

By characterising the molecular properties of these cell populations at several developmental stages and in adult animals, researchers at the Crick uncovered rules which control the assembly of the nervous system of the gut and how its constituent cell types acquire their properties. The team also showed that the support cells of the gut nervous system preserve the ability to form new nerves throughout life. These new findings will help us understand the development of some of the most severe gastrointestinal disorders and develop novel strategies for their treatment.

A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia

Published in Nature Communications

Published

Glial cells crucial to maintaining healthy gut immunity

Researchers from the Pachnis lab have uncovered a fundamental role of glial cells in the gut nervous system in maintaining a healthy intestine. These cells have been found to coordinate the immune responses of the gut following pathogen invasion and could be key targets when exploring new treatments for inflammatory bowel conditions.

Regulation of intestinal immunity and tissue repair by enteric glia

Published in Nature

Published

Lineage-dependent spatial and functional organization of the mammalian enteric nervous system

In this paper we use genetic lineage tracing and clonal analysis to characterise mammalian enteric nervous system progenitors, define differentiation trajectories for enteric neurons and glia during development and propose a new model for the 3-D organisation of the enteric nervous system.

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Published in Science

Published

Credit: Yuuki Obata and Álvaro Castaño, The Francis Crick Institute. Neuronal fibres labelled with rainbow fluorescence proteins.

Neuronal programming by microbiota regulates intestinal physiology

In this paper we explore the molecular mechanisms used by enteric neurons to monitor the luminal environment of the gut. In particular, we demonstrate that the transcription factor AhR functions as a biosensor of intestinal neural circuits, linking their functional output to the microbial environment of the gut lumen.

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Published in Nature

Published