Publication highlights

Go inside our research

Explore a selection of research case studies from the past five years.

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Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Highlights

Stem cells with XY and XX chromosomes

New human stem cells created to study sex-specific differences in development

Human induced pluripotent stem cells (iPSCs) mimic early embryos and can become any cell type, making them a powerful tool to study development and disease. However, most existing cell lines aren't suited to study sex differences. In collaboration with AstraZeneca, Turner lab researchers Ruta Meleckyte and Wazeer Varsally addressed this by creating new iPSCs with either XX (female) or XY (male) sex chromosomes. All other chromosomes were identical, so any differences observed can be linked to sex. These openly available iPSCs will enable more accurate modelling of sex-specific biology and may help in developing better, more personalised treatments in the future.

A human induced pluripotent stem cell toolbox for studying sex chromosome effects

Published in Stem Cell Reports

Published

Marsupial neural tube

Understanding the accelerated developmental pace of marsupials

Researchers at the Crick looked at genes in single cells in opossums during early development of organs to characterise temporal shifts in development, known as heterochrony. Although development in marsupials is relatively slow until gastrulation, they then accelerate development of tissues, particularly features required for locomotion and feeding, e.g., craniofacial structures and forelimbs. The team found that, during development, genes are read earlier and more quickly than in placental mammals. This led to neural crest cells migrating before the neural tube closes, motor neurons forming before the spinal cord closes, and patterning of future limbs coming before limb bud outgrowth - all these features are different from placental mammals. Their findings suggest that differences in protein production rates could regulate this phenomenon of heterochrony.

Marsupial single-cell transcriptomics identifies temporal diversity in mammalian developmental programs

Published in Developmental Cell

Published

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Marsupial research reveals how mammalian embryos form

Researchers at the Francis Crick Institute have revealed insight into why embryos erase a key epigenetic mark during early development, suggesting this may have evolved to help form a placenta. The team at the Crick investigated, for the first time, epigenetic changes in embryos of a marsupial, which diverged from eutherian mammals 160 million years ago. They created a map of DNA methylation in opossum eggs, sperm and embryos, finding that levels of methylation in eggs and sperm were more similar to each other than they were in eutherians. However, unlike eutherians, opossum embryos did not undergo a full wiping event. Instead, DNA methylation was retained in the early embryo, with loss occurring much later, and DNA demethylation was largely restricted to a specific supportive tissue called the trophectoderm, which becomes the marsupial placenta. These findings show that demethylation isn’t universally required for formation of an early mammalian embryo, instead, based on their findings, the team believe that wiping may have evolved specifically for the development of the placenta.

Divergent DNA methylation dynamics in marsupial and eutherian embryos

Published in Nature

Published

Illustration of X and Y chromosomes

Uncovering the role of Y chromosome genes in male fertility in mice

Researchers at the Crick have uncovered which genes on the Y chromosome regulate the development of sperm and impact fertility in male mice. They generated thirteen different mouse models, each with different Y genes removed, and investigated their fertility. The team found that several Y genes were critical for reproduction, and that if these genes were removed, the mice couldn’t produce young. Some other genes had no impact when removed individually, but did lead to the production of abnormal sperm when removed together. The results suggest that many Y genes play a role in fertility and can compensate for each other if one gene is lost. This also means that some cases of infertility likely result from multiple genes being deleted at the same time.

Systematic identification of Y-chromosome gene functions in mouse spermatogenesis

Published in Science

Published

left ventricular cardiomyocytes

A heartbeat in a dish – growing specialised heart cells

Researchers at the Crick have now developed a way to grow specialised left ventricular heart muscle cells from stem cells, opening up new opportunities for research into heart disease, drug screening, and potentially the development of new treatments.

Their methods are published today in Cell Reports Methods and have also been licensed to Axol Bioscience to commercialise the protocol for the generation and sale of cardiomyocytes for R&D and the provision of contract research services, especially in field of drug screening and cardiotoxicity assays.

Generation of left ventricle-like cardiomyocytes with improved structural, functional, and metabolic maturity from human pluripotent stem cells

Published in Cell Reports Methods

Published

Gene-editing used to create single sex mice litters

Researchers in the Turner lab, in collaboration with the University of Kent, used gene editing technology to create female-only and male-only mice litters with 100% efficiency. Targeting the Top1 gene, which is essential to DNA replication and repair, their method uses CRISPR-Cas9 to induce sex-linked lethality before embryo implantation, allowing only the desired sex to develop. This proof of principle study demonstrates how the technology could be used to improve animal welfare in scientific research and perhaps also agriculture.

CRISPR-Cas9 effectors facilitate generation of single-sex litters and sex-specific phenotypes

Published in Nature Communications

Published

Scalable and robust SARS-CoV-2 testing in an academic center

This paper decribes how we were able to successfully repurpose the Crick to increase the capacity for Sars-CoV-2 testing in unpredented times.

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Published in Nature Biotechnology

Published

COVID testing

Pandemic peak SARS-CoV-2 infection and seroconversion rates in London frontline health-care workers

This important paper showed very high levels of infection amongst healthcare workers in a local hospital. It has influenced government policy – asymptomatic healthcare workers are to be screened as per our recommendation (announced October 12th).

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Published in The Lancet

Published

IGF1-mediated human embryonic stem cell self-renewal recapitulates the embryonic niche

In this work we mined this database to refine hESC culture conditions. These data will be a powerful resource for the community and will lead to changes in how hESCs are cultured in the future. Building on these data, we demonstrated that IGF1-receptor/PI3K/AKT, but not FGF receptor, signalling is required for hESC self-renewal. We built a searchable website that includes a compendium of human embryo gene expression analysis and compiled a list of all possible ligand and receptor interactions.

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Published in Nature Communications

Published

Genome editing reveals a role for OCT4 in human embryogenesis

The first demonstration of the utility of CRISPR–Cas9-mediated genome editing for investigating gene function in the context of human embryonic development. We revealed a distinct role for the developmental regulator OCT4 in human versus mouse development.

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Published in Nature

Published

Frequent loss-of-heterozygosity in CRISPR-Cas9–edited
early human embryos

Crick researchers, including Kathy Niakan and James Turner, have revealed that CRISPR-Cas9 genome editing can lead to unintended mutations at the targeted section of DNA in early human embryos. The work highlights the need for greater awareness of and further research into the effects of CRISPR-Cas9 genome editing, especially when used to edit human DNA in laboratory research.

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Published in Proceedings of the National Academy of Sciences of the United States of America

Published

Fertile offspring from sterile sex chromosome trisomic mice

Here, we described a technique for reversing infertility in XXY (Klinefelter) and XYY (Jacob) syndrome mice. We showed that reprogramming of fibroblasts from these mice resulted in elimination of the extra sex chromosome, and that resulting XY cells could be converted by in vitro gametogenesis into functional sperm. Reprogramming could also chromosomally correct cells from Down syndrome mice and patients. The work revealed an unexpected role for reprogramming as a form of chromosome therapy.

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Published in Science

Published

The BCL-2 pathway preserves mammalian genome integrity by eliminating recombination-defective oocytes

Aneuploidy is remarkably common in human embryos, and most often results from defective recombination in the maternal germ line. There is therefore great interest in determining mechanisms that eliminate recombination-defective oocytes, and how defects in these mechanisms cause chromosome abnormalities in offspring. In this study, we showed that recombination-defective oocytes are eliminated via the BCL-2 pathway components Puma, Noxa and Bax. Our findings raised the possibility that allelic variants of the BCL-2 pathway could influence the risk of embryonic aneuploidy.

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Published in Nature Communications

Published

A single-cell transcriptome atlas of marsupial embryogenesis and X inactivation

Single-cell RNA sequencing of embryos can resolve the transcriptional landscape of development at unprecedented resolution, but such studies of mammalian embryos had focused exclusively on placental species. Analysis of mammalian outgroups might identify deeply-conserved lineage specification and pluripotency factors. In this study, we performed the first single-cell RNA-sequencing in a marsupial, which diverged from eutherians 160 million years ago. We identified many critical developmental regulators pre-dating the placental-marsupial separation which are thus likely to be especially important for embryogenesis. Our study has important implications for understanding the high rates of miscarriage in humans and for developing improved conditions for assisted reproduction.

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Published in Nature

Published