Publication highlights

Go inside our research

Explore a selection of research case studies from the past five years.

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A Crick researcher reading a scientific paper on a screen.

Intro

Researchers at the Crick are tackling the big questions about human health and disease, and new findings are published every week.

Our faculty have picked some of the most significant papers published by Crick scientists, all of which are freely available thanks to our open science policy.

Year published

Highlights

Cell division in high resolution

Researchers in the Costa and Diffley labs have used high resolution cryo-electron microscopy techniques to observe replicative helicase activation following loading onto DNA. As a prelude to cell division, the genome must be duplicated, and replicative helicases play a fundamental part in this, unwinding DNA and exposing the single-stranded template for the replicative polymerases. The team characterised the role of the key enzymes involved in selectively activating the replicative helicases at the right time and in the right places on DNA, an important step forward in understanding exactly how DNA replication works in both health and disease.

Structural mechanism for the selective phosphorylation of DNA-loaded MCM double hexamers by the Dbf4-dependent kinase

Published in Nature Structural and Molecular Biology

Published

Scientists find that the way tumours grow impacts their genetics

Researchers from the Bates, Turajlic and Sahai labs have collaborated to develop a computer model to analyse how the way in which tumours grow affects their genetic makeup. Using this new model, they have identified links between tumour growth and shape, and how quickly a patient’s cancer might progress.

Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study

Published in Nature Ecology and Evolution

Published

HELQ enzyme facilitates DNA repair

Researchers from the Boulton Lab, in collaboration with the MRC London Institute of Medical Sciences and the Memorial Sloan Kettering Cancer Center, have uncovered the mechanism by which an enzyme called HELQ assists in repairing DNA. Through the use of biochemical analysis and single-molecule imaging, the team have shown HELQ can mend DNA double-stranded breaks by virtue of two distinct activities that are enhanced through its interaction with two other proteins, RAD51 and RPA. Loss of HELQ causes defects in DNA repair, which can lead to cancer and cause infertility, and these results explain the reason for its importance.

HELQ is a dual-function DSB repair enzyme modulated by RPA and RAD51

Published in Nature

Published

New tool to control of fruit fly gene expression using light

Researchers in the Vincent Lab, , in collaboration with the group of Yohanns Bellaiche at Institut Curie in Paris, have developed a new tool for robust control of gene expression in Drosophila using light. They successfully used the new method to activate key genes in different tissues and at various developmental stages and demonstrated gain and loss-of-function phenotypes at animal, organ, and cellular levels. Their work provides developmental biologists with the ability to control gene expression with high temporal and spatial resolution, a valuable addition to the Drosophila genetic toolkit.

Rapid and robust optogenetic control of gene expression in Drosophila

Published in Developmental Cell

Published

Gene-editing used to create single sex mice litters

Researchers in the Turner lab, in collaboration with the University of Kent, used gene editing technology to create female-only and male-only mice litters with 100% efficiency. Targeting the Top1 gene, which is essential to DNA replication and repair, their method uses CRISPR-Cas9 to induce sex-linked lethality before embryo implantation, allowing only the desired sex to develop. This proof of principle study demonstrates how the technology could be used to improve animal welfare in scientific research and perhaps also agriculture.

CRISPR-Cas9 effectors facilitate generation of single-sex litters and sex-specific phenotypes

Published in Nature Communications

Published

Researchers identify new PKCε target as key to successful cell division

Researchers in the Parker lab have unpicked the action of protein kinase C (PKC) in modulating cell growth and division. The team developed a novel trap for proteins regulated by PKC by engineering UV-photocrosslinkable amino acids into PKCε to produce a sort of molecular flypaper. They captured a previously unknown PKCε target, the RNA-binding protein SERBP1, and showed that SERBP1 was required for successful chromosome segregation and cell division. Their work provides a new insight into how cells protect their genome during division and also which regulatory processes could play a key role when cells become cancerous.

A genetically-encoded crosslinker screen identifies SERBP1 as a PKCε substrate influencing translation and cell division

Published in Nature Communications

Published

Bone marrow backup needed to tackle respiratory infections

Researchers in the Reis e Sousa lab have found how the immune system triggers an ‘emergency’ dendritic cell response during infection. Dendritic cells have an important role in the immune system, detecting infectious bacteria, fungi or viruses that have entered the body and alerting T cells which recognise and attack the invader. However, there are few dendritic cells in healthy tissue like the lungs which means that, on infection, their numbers need to be boosted. In their study, the team monitored dendritic cells in mice infected with flu virus and found that, after infection, new dendritic cells are released from the bone marrow in response to a chemokine ‘distress’ signal which directs them to the site of infection.

Recruitment of dendritic cell progenitors to foci of influenza A virus infection sustains immunity

Published in Science Immunology

Published

Glial cells crucial to maintaining healthy gut immunity

Researchers from the Pachnis lab have uncovered a fundamental role of glial cells in the gut nervous system in maintaining a healthy intestine. These cells have been found to coordinate the immune responses of the gut following pathogen invasion and could be key targets when exploring new treatments for inflammatory bowel conditions.

Regulation of intestinal immunity and tissue repair by enteric glia

Published in Nature

Published

Researchers identify role of key gene in embryonic development

A zebrafish study by researchers in the Hill lab has provided new insights into the role of the SMAD4 protein in vertebrate embryo development. Very early in development, SMAD4 was thought to be required to transmit signals from two closely related members of the TGF-β protein family, BMP and Nodal, which are responsible for organising different parts of the body plan of an embryo. Surprisingly, when the Smad4 gene was deleted in zebrafish, the parts of the embryo patterned by BMP signalling were severely disrupted, but those for which Nodal was responsible were far less affected. SMAD4 is thus differentially required for signalling by different TGF-β family members, which has implications for diseases such as cancer where it is mutated or deleted.

Smad4 controls signaling robustness and morphogenesis by differentially contributing to the Nodal and BMP pathways

Published in Nature Communications

Published

Patients with blood cancer found to have lower protection against SARS-CoV-2

As part of the largest study to comprehensively evaluate the response of patients with cancer to COVID-19 vaccines, researchers in the Turajlic lab monitored the immune response of 585 patients with different types of cancer after receiving a first and second dose of the COVID-19 vaccine.
They found that patients with blood cancer were less likely to have antibodies than individuals of a similar age without cancer or with solid cancer, and when they did have antibodies, the levels were lower against all variants.

Adaptive immunity and neutralizing antibodies against SARS-CoV-2 variants of concern following vaccination in patients with cancer: the CAPTURE study

Published in Nature Cancer

Published

New insights into malaria drug target

A study led by Ed Tate and Tony Holder has looked at how the NMT inhibitor blocks the human malaria parasite, Plasmodium falciparum. The team found at least three mechanisms where inhibition of NMT can disrupt parasite development, and therefore demonstrate the importance of P. falciparum NMT as a drug target.

Inhibition of protein N-myristoylation blocks Plasmodium falciparum intraerythrocytic development, egress and invasion

Published in PLOS Biology

Published

How mutations change the sense of smell

A study led by Lucia Prieto-Godino has investigated evolutionary changes in ligand preference that occur in a family of olfactory receptors. The work found that different receptors’ odour preferences are linked to particular protein mutations. Some of these mutations appear at the same position over evolutionary distances, highlighting of a “hot-spot” that has a major role in determining ligand preference.

Molecular reconstruction of recurrent evolutionary switching in olfactory receptor specificity

Published in eLife

Published

The molecular basis behind transposition

Research from Ian Taylor’s lab has investigated the molecular basis of Ty1 transposition, which is regulated by copy number control. Their work presents the structural, biophysical and genetic analyses of p18m, a key protein that directs copy number control through disruption of Ty1 virus-like particle assembly.

Structure of a Ty1 restriction factor reveals the molecular basis of transposition copy number control

Published in Nature Communications

Published

New insights into HIV infection

A study from the Bishop lab has looked into HIV-1 uncoating, the process by which the viral core breaks down during infection. Their work suggests that uncoating or remodelling of the HIV-1 capsid lattice occurs at the nuclear pore, and that this step is essential for a productive infection.

HIV-1 requires capsid remodelling at the nuclear pore for nuclear entry and integration

Published in PLOS Pathogens

Published

New insights into protein mutation causing ALS

A new study led by postdoc Martina Hallegger and the Ule lab describes what happens when the RNA binding protein TDP-43 is mutated and its condensation properties change. The protein is often mutated in the rare neurological disease, amyotrophic lateral sclerosis (ALS).

TDP-43 condensation properties specify its RNA-binding and regulatory repertoire

Published in Cell

Published

New insights into how the spinal cord develops

The Briscoe lab has used single cell mRNA sequencing to study the developing human spinal cord during gestational weeks 4 to 7. The team compared their results with the ones obtained in mice and found similarities as well as human-specific differences. This data is available as an open resource and will prove useful for future studies into sensory and motor control systems.

Single cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human specific features

Published in Development

Published

Stem cells can use same method as plants and insects to protect against viruses

Research from the Reis e Sousa lab has found a mechanism, previously thought to have disappeared as mammals evolved, that helps protect mammalian stem cells from RNA viruses such as SARS-CoV-2 and Zika virus. The lab suggest this could one day be exploited in the development of new antiviral treatments.

An isoform of Dicer protects mammalian stem cells against multiple RNA viruses

Published in Science

Published